2016: IMIA Yearbook 2016

Journal: IMIA Yearbook
ISSN: 0943-4747
Topic:

Unintended Consequences: New Problems and New Solutions


61 articles
41.

Section 8: Bioinformatics and Translational Informatics

Synopsis

H. Dauchel (1), T. Lecroq (1)

(1) Normandie Univ., UNIROUEN, LITIS, Rouen, France

Yearb Med Inform 2016 : 207-210

https://doi.org/10.15265/IY-2016-050

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42.

Section 8: Bioinformatics and Translational Informatics

Gurdasani D, Carstensen T, Tekola-Ayele F, Pagani L, Tachmazidou I, Hatzikotoulas K, Karthikeyan S, Iles L, Pollard MO, Choudhury A, Ritchie GR, Xue Y, Asimit J, Nsubuga RN, et al. The African Genome Variation Project shapes medical genetics in Africa. Nature 2015 Jan 15;517(7534):327-32. https://dx.doi.org/10.1038/nature13997

Korthauer KD, Kendziorski C. MADGiC: a model-based approach for identifying driver genes in cancer. Bioinformatics 2015 May 15;31(10):1526-35. https://dx.doi.org/10.1093/bioinformatics/btu858

Leiserson MD, Vandin F, Wu HT, Dobson JR, Eldridge JV, Thomas JL, Papoutsaki A, Kim Y, Niu B, McLellan M, Lawrence MS, Gonzalez-Perez A, Tamborero D, Cheng Y, Ryslik GA, Lopez-Bigas N, Getz G, Ding L, Raphael BJ. Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes. Nat Genet 2015 Feb;47(2):106-14. https://dx.doi.org/10.1038/ng.3168

Zhu Y, Xu Y, Helseth DL Jr, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. J Natl Cancer Inst 2015 May 8;107(8). https://dx.doi.org/10.1093/jnci/djv129

Yearb Med Inform 2016 : 209-210

[Summary]
43.

Section 9: Clinical Research Informatics

Survey

C. Weng (1), M.G. Kahn (2)

(1) Department of Biomedical Informatics, Columbia University, New York, NY 10032 USA; (2) Department of Pediatrics, University of Colorado, Denver, CO 80045 USA

Yearb Med Inform 2016 : 211-218

https://doi.org/10.15265/IY-2016-019

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44.

Section 9: Clinical Research Informatics

Synopsis

C. Daniel (1, 2), R. Choquet (1, 3)

(1) INSERM UMRS 1142, Paris, France; (2) Direction of Information Systems, AP-HP, Paris, France; (3) BNDMR, Necker Hospital for Children, AP-HP, Paris, France

Yearb Med Inform 2016 : 219-223

https://doi.org/10.15265/IY-2016-044

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45.

Section 9: Clinical Research Informatics

Gray EA, Thorpe JH. Comparative effectiveness research and big data: balancing potential with legal and ethical considerations. J Comp Eff Res 2015 Jan;4(1):61-74. https://dx.doi.org/10.2217/cer.14.51

Huser V, Sastry C, Breymaier M, Idriss A, Cimino JJ. Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM). J Biomed Inform 2015 Oct;57:88-9. https://dx.doi.org/10.1016/j.jbi.2015.06.023

Kho AN, Cashy JP, Jackson KL, Pah AR, Goel S, Boehnke J, Humphries JE, Kominers SD, Hota BN, Sims SA, Malin BA, French DD, Walunas TL, Meltzer DO, Kaleba EO, Jones RC, Galanter WL. Design and implementation of a privacy preserving electronic health record linkage tool in Chicago. J Am Med Inform Assoc 2015 Sep;22(5):1072-80. https://dx.doi.org/10.1093/jamia/ocv038

Kreuzthaler M, Schulz S, Berghold A. Secondary use of electronic health records for building cohort studies through top-down information extraction. J Biomed Inform 2015 Feb;53:188-95. https://dx.doi.org/10.1016/j.jbi.2014.10.010

Yearb Med Inform 2016 : 222-223

[Summary]
46.

Section 10: Natural Language Processing

Survey

D. Demner-Fushman (1), N. Elhadad (2)

(1) National Library of Medicine, National Institutes of Health, Bethesda, MD, USA; (2) Columbia University, New York, NY, USA

Yearb Med Inform 2016 : 224-233

https://doi.org/10.15265/IY-2016-017

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47.

Section 10: Natural Language Processing

Synopsis

A. Névéol (1), P. Zweigenbaum (1)

(1) LIMSI CNRS UPR 3251, Université Paris Saclay, Orsay, France

Yearb Med Inform 2016 : 234-239

https://doi.org/10.15265/IY-2016-049

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48.

Section 10: Natural Language Processing

Li Q, Spooner SA, Kaiser M, Lingren N, Robbins J, Lingren T, Tang H, Solti I, Ni Y. An end-to-end hybrid algorithm for automated medication discrepancy detection. BMC Med Inform Decis Mak 2015 May 6;15:37. https://dx.doi.org/10.1186/s12911-015-0160-8

Luo Y, Xin Y, Hochberg E, Joshi R, Uzuner O, Szolovits P. Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. J Am Med Inform Assoc 2015 Sep;22(5):1009-19. https://dx.doi.org/10.1093/jamia/ocv016

Ni Y, Kennebeck S, Dexheimer JW, McAneney CM, Tang H, Lingren T, Li Q, Zhai H, Solti I. Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department. J Am Med Inform Assoc 2015 Jan;22(1):166-78. https://dx.doi.org/10.1136/amiajnl-2014-002887

Oronoz M, Gojenola K, Pérez A, de Ilarraza AD, Casillas A. On the creation of a clinical gold standard corpus in Spanish: Mining adverse drug reactions. J Biomed Inform 2015 Aug;56:318-32. https://dx.doi.org/10.1016/j.jbi.2015.06.016

Prud’hommeaux E, Roark B. Graph-Based Word Alignment for Clinical Language Evaluation. Computational Linguistics 2015 Dec:41(4):549-78. https://dx.doi.org/10.1162/COLI_a_00232

Yearb Med Inform 2016 : 238-239

[Summary]
49.

Section 11: Public Health and Epidemiology Informatics

Survey

A. Flahault (1, 2), A. Bar-Hen (2), N. Paragios (3, 4)

(1) Institute of Global Health, University of Geneva, Geneva, Switzerland; (2) Centre Virchow-Villermé, Université Paris Descartes, Paris, France; (3) Center for Visual Computing, CentraleSupélec, University of Paris-Saclay, Saint-Aubin, France; (4) Inria, France

Yearb Med Inform 2016 : 240-246

https://doi.org/10.15265/IY-2016-021

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50.

Section 11: Public Health and Epidemiology Informatics

Synopsis

L. Toubiana (1), N. Griffon (1, 2)

(1) INSERM UMRS 1142 LIMICS, Université Pierre et Marie Curie - Paris, France; (2) Département d’information et d’informatique médicale, TIBS, LITIS EA 4108, Rouen University Hospital, Normandy, Rouen, France

Yearb Med Inform 2016 : 247-250

https://doi.org/10.15265/IY-2016-047

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51.

Section 11: Public Health and Epidemiology Informatics

Hu Z, Jin B, Shin AY, Zhu C, Zhao Y, Hao S, Zheng L, Fu C, Wen Q, Ji J, Li Z, Wang Y, Zheng X, Dai D, Culver DS, Alfreds ST, Rogow T, Stearns F, Sylvester KG, Widen E, Ling XB. Real-time web-based assessment of total population risk of future emergency department utilization: statewide prospective active case finding study. Interact J Med Res 2015 Jan-Mar;4(1):e2. https://doi.org/10.2196/ijmr.4022

Jafarpour N, Izadi M, Precup D, Buckeridge DL. Quantifying the determinants of outbreak detection performance through simulation and machine learning. J Biomed Inform 2015 Feb;53:180-7. https://dx.doi.org/10.1016/j.jbi.2014.10.009

Lejeune G, Brixtel R, Doucet A, Lucas N. Multilingual event extraction for epidemic detection. Artif Intell Med 2015 Oct;65(2):131-43. https://dx.doi.org/10.1016/j.artmed.2015.06.005

Yearb Med Inform 2016 : 249-250

[Summary]
52.

IMIA Award Article

E. Coiera (1)

(1) Australian Institute of Health Innovation, Macquarie University, Australia

Yearb Med Inform 2016 : 251-255

https://doi.org/10.15265/IY-2016-018

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53.

IMIA Award Article

P. Degoulet (1, 2)

(1) Public Health and Medical Informatics Department, Paris Descartes University, France; (2) INSERM UMR_S 1138 team 22: Information Sciences to support Personalized Medicine, Paris, France

Yearb Med Inform 2016 : 256-263

https://doi.org/10.15265/IY-2016-030

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54.

Research & Education

M. R. Cummins (1, 2), A. V. Gundlapalli (2, 3), A. V. Gundlapalli (4, 5), P. Murray (6), H.-A. Park (7), C. U. Lehmann (8)

(1) University of Utah College of Nursing, Salt Lake City, UT, USA; (2) University of Utah School of Medicine, Salt Lake City, UT, USA; (3) VA Salt Lake City Health Care System, Salt Lake City, UT, USA; (4) Utah County Academy of Sciences, Orem, UT, USA; (5) University of Utah College of Engineering, Salt Lake City, UT, USA; (6) International Medical Informatics Association, Geneva, CH; (7) Seoul National University, Seoul, South Korea; (8) Vanderbilt University Medical Center, Nashville, TN, USA

Yearb Med Inform 2016 : 264-271

https://doi.org/10.15265/IY-2016-039

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55.

Yearb Med Inform 2016 : 272-274

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56.

Yearb Med Inform 2016 : 275-278

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57.

Yearb Med Inform 2016 : 279-294

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58.

Yearb Med Inform 2016 : 295-310

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59.

Yearb Med Inform 2016 : 311-325

[Summary]
60.

Yearb Med Inform 2016 : 326-326

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